PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P03950_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 790aa    MW: 86209.3 Da    PI: 6.0064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P03950_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00045595961355
                            HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            R++i +++ eLre++P+ a      K s  + L k+++++  Lq
  GSMUA_Achr1P03950_001 559 RQQIQDRLKELREIVPNgA------KCSIDALLDKTIKHMLFLQ 596
                            89***************66......8888889999999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.912546595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-5559601IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00511559596No hitNo description
Gene3DG3DSA:4.10.280.104.7E-4559600IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MESVTGHFQC IDTHEEVEFH DQHGAFGFTS SSGDAYSCYQ NTNTIHEAYR EQLNNTNTLG  60
GRAMAPHLFS LESYHGSSSH KSKMSPFAVE TPVTCSTGDS RDFCNSFQNT FFMSRNSSFD  120
LTEQQNAAAV QAQVQVTPNT KFLSISHHPE NSGVTYLKTV NCSSNIFNMP MMEHGLSSGM  180
QNHLVLTNSN LPFHFMNILH KFCADSPSSS KFALHDSIPK ARSSNVVKAC IYGAEKLPLP  240
LGALYGGKPS GLFSSFASEH LNDFVTDPSD LTPENPLLCH PKDALVASHC HQQSEHVIDD  300
VTTQMNENLL GARSIPAGPT GYSLINGSSG KQVESSISAA VNSLVLENDK EKSSLSPVQP  360
LSDNDLFDGM QLDMRPKDFV HELWDDNTGH NSCSNMSADS DCISVTEMGL RPRGDKGLFS  420
ESSLQQLLDA IVGDHLNKAS SHGSAAKYVH AISGPNLENQ FSTSLVGPSV YSNLVPSIGV  480
PTINGTSGVL LPYCNSEIGH GSPKQELSNT TICSWIDDSC SMNTENSVLN QPKKPEEAAK  540
VVKKRARPGE STRPRPKDRQ QIQDRLKELR EIVPNGAKCS IDALLDKTIK HMLFLQSVTK  600
YADKLKQADE PKIIGEESGV VLKDNSGGVG GGGATWAYEV AGQTMVCPII VEDLTPPGQM  660
LVEMVCEDRG LFLEIADIIR GFGLIILKGI MEIRERKIWA RFLVEANREV TRMDIFLSLI  720
QLLQQNSCLR SGDLANKVMD KGAPVFPGYH QSPIVSSISN LTCLNDGIGC YNVLDAVYRL  780
IVILLSRIKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389431.10.0PREDICTED: transcription factor LHW-like isoform X1
TrEMBLM0RWV30.0M0RWV3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P03950_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.15e-49conserved peptide upstream open reading frame 7